Recent 1D and 2D TD-NMR Pulse Sequences for Plant Science.

Time domain nuclear magnetic resonance (TD-NMR) has been widely applied in plant science in the last four decades. Several TD-NMR instruments and methods have been developed for laboratory, green-house, and field studies. This mini-review focuses on the recent TD-NMR pulse sequences applied in plant science. One of the sequences measures the transverse relaxation time (T2) with minimal sample heating, using a lower refocusing flip angle and consequently lower specific absorption rate than that of conventional CPMG. Other sequences are based on a continuous wave free precession (CWFP) regime used to enhance the signal-to-noise ratio, to measure longitudinal (T1) and transverse relaxation time in a single shot experiment, and as alternative 2D pulse sequences to obtain T1-T2 and diffusion-T1 correlation maps. This review also presents some applications of these sequences in plant science.

Low field, time domain NMR in the agriculture and agrifood sectors: An overview of applications in plants, foods and biofuels.

In this contribution, a selective overview of low field, time-domain NMR (TD-NMR) applications in the agriculture and agrifood sectors is presented. The first applications of commercial TD-NMR instruments were in food and agriculture domains. Many of these earlier methods have now been recognized as standard methods by several international agencies. Since 2000, several new applications have been developed, using state of the art instruments, new pulse sequences and new signal processing methods. TD-NMR is expected, in the coming years, to become even more important in quality control of fresh food and agricultural products, as well as for a wide range of food-processed products. TD-NMR systems provide excellent means to collect data relevant for use in the agricultural environment and the bioenergy industry. Data and information collected by TD-NMR systems thus may support decision makers in business and public organizations.

Characterization of chicken muscle disorders through metabolomics, pathway analysis, and water relaxometry: a pilot study.

Metabolite profiles of chicken breast extracts and water mobility in breasts were studied using proton nuclear magnetic resonance (1H-NMR) spectroscopy and time-domain NMR (TD-NMR) relaxometry, respectively, using normal breast (NB), and wooden breast (WB) and white striping (WS) myopathies in broilers. One thousand eight hundred sixty broilers were raised to commercial standards, receiving the same diets that were formulated as per the different growth stages. At 49 D of age, 200 animals were slaughtered following routine commercial procedures, and at 4 h postmortem, the whole breast (pectoralis major muscle) was removed and visually inspected by an experienced meat inspector who selected NB (without myopathies) and samples with the presence of WS and WB myopathies. Fifteen breasts (5 each of NB, WS, and WB) were analyzed through TD-NMR relaxometry, and samples of approximately 20 g were taken from each breast and frozen at -80°C for metabolite profiling through 1H-NMR spectroscopy. Multivariate statistical analysis was used to evaluate the effect on water relaxometry and metabolite profile in accordance with the presence and type of myopathy in the breast. 1H-NMR data showed that the metabolite profiles in WS and WB breasts were different from each other and from NB. This pilot study shows that myopathies appear to be related to hypoxia, connective tissue deposition, lower mitochondrial function, and greater oxidative stress compared with NB. The longitudinal and transverse relaxation time of the breasts determined by TD-NMR relaxometry was shorter for NB than that for WS and WB, indicating greater water mobility in breasts affected by myopathies. 1H-NMR spectroscopy can be used to differentiate the metabolism of WS, WB, and NB, and TD-NMR has the potential to be a fast, simple, and noninvasive method to distinguish NB from WB and WS. As a practical application, the metabolomic profile as per the occurrence of breast myopathies may be used for a better understanding of these issues, which opens a gap to mitigate the incidence and severity of WS and WB. In addition, the present study brings an opportunity for the development of a new and objective tool to classify the incidence of breast myopathies through TD-NMR relaxometry.

New and rapid pulse sequences for two-dimensional D-T1 correlation measurements.

Longitudinal relaxation time (T1), transverse relaxation time (T2) and diffusion coefficient (D) values have been widely used for the characterizations of materials using low field Time Domain Nuclear Magnetic Resonance (TD-NMR). Each parameter can be determined using one-dimensional techniques or their values and correlations by multi-dimensional experiments such as T1-T2, D-T2, and T1-D-T2. In this work, we studied four D-T1 sequences for TD-NMR combining Stejskal-Tanner Pulse Gradient Spin Echo (PGSE) diffusion measurement with Inversion-Recovery (IR), Saturation-Recovery (SR), Small-Angle Continuous Wave Free Precession (CWFP-T1) and Small-Angle Flip-Flop (SAFF) for T1 measurement. The results show that rapid D-T1 measurements can be obtained with single shot CWFP-T1 and SAFF sequences. The two sequences were two and eight time fast than sequences based on SR and IR, respectively. Although the two fast sequences yield low signal-to-noise ratio signal, they can be as fast as the traditional D-T2 experiment, or even faster, because it is not necessary to wait a recycle delay of 5 T1. Another advantage of the CWFP-T1 and SAFF methods, when compared to the one based on SR or CPMG (for D-T2) are the low specific absorption rate (SAR) of these sequences due the low flip angles in the sequences, that reduces the sample heating problem. These sequences were initially studied using phantom samples. They also were used to study plant tissues to observe the anisotropic diffusion in asparagus. Therefore, they can be useful methods for practical application in TD-NMR.

Using T1 as a direct detection dimension in two-dimensional time-domain NMR experiments using CWFP regime.

The transverse relaxation time (T2), measured with Carr-Purcell-Meiboom-Gill (CPMG) sequence, has been widely used to obtain the direct dimension data in two-dimension time domain NMR (2D TD-NMR). In this paper we are demonstrating that Continuous Wave Free Precession sequence, with low flip angle (CWFP-T1), can be an alternative to CPMG as direct detection dimension. CWFP-T1 is a fast single shot sequence, like CPMG, and yields an exponential signal governed predominantly by the longitudinal (T1) relaxation time. To obtain the correlations between T1 and T2 (T1-T2 maps) we are proposing the use of CPMG-CWFP-T1 pulse sequence. In this sequence CPMG encodes T2 information (indirect dimension) that modulates the CWFP-T1 (direct dimension) signal amplitudes. CPMG-CWFP-T1 experiments were compared with classical 2D sequences such as Saturation-Recovery-CPMG (SR-CPMG) and Inversion-Recovery-CPMG (IR-CPMG) sequence and yields similar results in phantom sample. The experimental time for the 2D sequences, using single scan, shows that SR-CPMG ≤ CPMG-CWFP-T1 < IR-CPMG. Experimental and simulated results demonstrated that 2D-CPMG-CWFP-T1 maps have higher resolution in T1 dimension than the techniques that uses CPMG as direct dimension. CPMG-CWFP-T1 sequence was also applied to study beef samples, and 2D maps showed higher resolution in the two fat signals than the classical IR-CPMG method.

Enhancing signal-to-noise ratio and resolution in low-field NMR relaxation measurements using post-acquisition digital filters.

The traditional way to enhance signal-to-noise ratio (SNR) of nuclear magnetic resonance (NMR) signals is to increase the number of scans. However, this procedure increases the measuring time that can be prohibitive for some applications. Therefore, we have tested the use of several post-acquisition digital filters to enhance SNR up to one order of magnitude in time domain NMR (TD-NMR) relaxation measurements. The procedures were studied using continuous wave free precession (CWFP-T1 ) signals, acquired with very low flip angles that contain six times more noise than the Carr-Purcell-Meiboom-Gill (CPMG) signal of the same sample and experimental time. Linear (LI) and logarithmic (LO) data compression, low-pass infinity impulse response (LP), Savitzky-Golay (SG), and wavelet transform (WA) post-acquisition filters enhanced the SNR of the CWFP-T1 signals by at least six times. The best filters were LO, SG, and WA that have high enhancement in SNR without significant distortions in the ILT relaxation distribution data. Therefore, it was demonstrated that these post-acquisition digital filters could be a useful way to denoise CWFP-T1 , as well as CPMG noisy signals, and consequently reducing the experimental time. It was also demonstrated that filtered CWFP-T1 method has the potential to be a rapid and nondestructive method to measure fat content in beef and certainly in other meat samples.

Time-domain NMR relaxometry as an alternative method for analysis of chitosan-paramagnetic ion interactions in solution.

Chitosan (CHI)-paramagnetic ion interactions in aqueous solution as affected by pH were studied using time-domain NMR (TD-NMR) relaxometry. Longitudinal (T1) and transverse (T2) relaxation times of CHI solutions with Fe3+, Cu2+, and Mn2+ were measured using a single-shot pulse sequence named CP-CWFPx-x. The results indicate that CHI interacted with Fe3+ ions or iron oxide nanoparticles, maintaining the metal ion in solution at pH ranging from 3 to 5. Above this pH, CHI coagulated and removed Fe ions or nanoparticles, resulting in a clear supernatant. CHI probably interacted with Cu ions at pH 6.2 through the deprotonated CHI-NH2 groups maintaining the relaxation effect in alkaline solution, whereas Mn2+ did not interact with CHI strongly enough to produce a complex of high stability. The proposed method can also be further exploited in the study of interactions paramagnetic ions with others CHI and CHI derivatives as well as of other water-soluble polysaccharides.

Rapid and simple determination of T1 relaxation times in time-domain NMR by Continuous Wave Free Precession sequence.

Longitudinal (T1) and transverse (T2) relaxation times have been widely used in time-domain NMR (TD-NMR) to determine several physicochemical properties of petroleum, polymers, and food products. The measurement of T2 through the CPMG pulse sequence has been used in most of these applications because it denotes a rapid, robust method. On the other hand, T1 has been occasionally used in TD-NMR due to the long measurement time required to collect multiple points along the T1 relaxation curve. Recently, several rapid methods to measure T1 have been proposed. Those methods based upon single shot, known as Continuous Wave Free Precession (CWFP) pulse sequences, have been employed in the simultaneous measurement of T1 and T2 in a rapid fashion. However, these sequences can be used exclusively in instrument featuring short dead time because the magnitude of the signal at thermal equilibrium is required. In this paper, we demonstrate that a special CWFP sequence with a low flip angle can be a simple and rapid method to measure T1 regardless of instruments dead time. Experimental results confirmed that the method called CWFP-T1 may be used to measure both single T1 value and T1 distribution in heterogeneous samples. Therefore, CWFP-T1 sequence can be a feasible alternative to CPMG in the determination of physicochemical properties, particularly in processes where fast protocols are requested such as industrial applications.

On resonance phase alternated CWFP sequences for rapid and simultaneous measurement of relaxation times.

T1 and T2 relaxation times have been frequently used as probes for physical-chemical properties in several time-domain NMR applications (TD-NMR) such as food, polymers and petroleum industries. T2 measurements are usually achieved using the traditional Carr-Purcell-Meiboom-Gill (CPMG) pulse sequence because it is a fast and robust method. On the other hand, the traditional methods for determining T1, i.e., inversion and saturation recovery, are time-consuming, driving several authors to develop rapid 1D and 2D methods to obtain T1 and T2 or T1/T2 ratio. However, these methods usually require sophisticated processing and/or high signal to noise ratio (SNR). This led us to develop simple methods for rapid and simultaneous determination of T1 and T2 using Continuous Wave Free Precession (CWFP) and Carr-Purcell Continuous Wave Free Precession (CP-CWFP) pulse sequences. Nevertheless, a drawback of these sequences is that they require specific adjustment of the frequency offset or the time interval between pulses (Tp). In this paper we present an alternative form of these sequences, named CWFPx-x, CP-CWFPx-x, where a train of π/2 pulses with phases alternated by π enable performing the experiments on-resonance and independently of Tp, when Tp